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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
Assay category
20
DNA binding
Target of assay
1017
histone modification
1016
histone
514
narrow histone mark
501
broad histone mark
486
transcription factor
339
control
RNA binding protein
89
recombinant protein
34
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
9
November, 2017
5
November, 2018
2
August, 2017
2
December, 2017
December, 2018
2
January, 2019
Available data
20
bam
20
bed narrowPeak
20
bigWig
20
fastq
18
bigBed narrowPeak
3
bed broadPeak
3
bigBed broadPeak
Organism
20
Homo sapiens
Biosample type
16
cell line
2
in vitro differentiated cells
2
tissue
Organ
15
liver
3
blood
3
bodily fluid
2
connective tissue
Project
20
AMP
Genome assembly (visualization)
20
hg19
19
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
8
inconsistent control read length
5
inconsistent control run_type
files.file_type!
bedpe
month_released!
December, 2018
organ_slims!
lung
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
cell line
HepG2
13
GM12878
3
in vitro differentiated cells
adipocyte
2
tissue
liver
2
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