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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
44
ATAC-seq
33
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
48
DNA accessibility
33
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
4
May, 2019
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
98
bam
81
bigWig
72
bed narrowPeak
56
tsv
24
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
137
Homo sapiens
Biosample type
71
tissue
66
cell line
Organ
883
pancreas
723
liver
638
connective tissue
501
epithelium
456
adipose tissue
357
heart
340
kidney
265
brain
219
vasculature
215
blood vessel
159
bone element
137
artery
117
limb
86
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
124
GRCh38
89
hg19
Lab
137
AMP-T2D consortium
files.file_type!
bedpe
month_released!
July, 2019
October, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
137 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
35
4
2
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
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