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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
46
ATAC-seq
43
ChIP-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
66
Transcription
51
DNA accessibility
43
DNA binding
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
35
February, 2023
28
May, 2019
12
October, 2019
8
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
118
bam
91
bigWig
76
bed narrowPeak
67
tsv
26
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
164
Homo sapiens
Biosample type
97
tissue
66
cell line
1
primary cell
Organ
867
pancreas
749
liver
640
connective tissue
epithelium
471
adipose tissue
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
164
AMP
Genome assembly (visualization)
134
GRCh38
99
hg19
Lab
164
AMP-T2D consortium
files.file_type!
bedpe
organ_slims!
epithelium
kidney
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
164 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
1
36
5
2
aorta
1
6
4
2
1
1
tibial artery
1
1
9
2
thoracic aorta
2
1
9
ascending aorta
2
8
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the coronary artery
1
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