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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
160
total RNA-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
ATAC-seq
2
Hi-C
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
182
DNA binding
164
Transcription
7
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Target of assay
104
control
65
histone modification
64
histone
44
narrow histone mark
20
broad histone mark
13
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
194
May, 2020
66
November, 2017
48
August, 2017
13
December, 2017
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
2
March, 2020
2
November, 2018
1
December, 2018
1
February, 2020
Available data
681
bam
588
bigWig
465
fastq
407
bed narrowPeak
bigBed narrowPeak
165
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
361
Homo sapiens
Biosample type
271
tissue
77
cell line
12
primary cell
1
in vitro differentiated cells
Organ
650
connective tissue
631
pancreas
480
adipose tissue
361
liver
288
epithelium
256
heart
159
brain
158
bone element
151
vasculature
149
blood vessel
116
artery
59
kidney
55
eye
47
musculature of body
38
limb
37
embryo
17
nerve
16
skeleton
12
spleen
8
vein
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
361
AMP
Genome assembly (visualization)
235
hg19
205
GRCh38
Lab
361
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bedpe bed3+
bigBed narrowPeak
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
361 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
pCHi-C
small RNA-seq
ATAC-seq
Hi-C
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
107
147
3
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
67
5
1
2
1
1
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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