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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
67
ChIP-seq
6
WGBS
3
ATAC-seq
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
67
DNA binding
6
DNA methylation
3
DNA accessibility
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
386
February, 2021
55
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
October, 2017
Available data
441
bam
424
bigWig
401
tsv
43
fastq
12
bed narrowPeak
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
Organism
478
Homo sapiens
Biosample type
477
tissue
2
primary cell
Organ
843
pancreas
654
connective tissue
479
adipose tissue
443
epithelium
431
liver
296
heart
250
kidney
159
bone element
151
vasculature
149
blood vessel
149
brain
116
artery
55
eye
47
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
spleen
8
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
479
AMP
Genome assembly (visualization)
415
hg19
414
GRCh38
Lab
479
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bedpe bed3+
bigBed narrowPeak
month_released!
October, 2017
organ_slims!
spleen
BIOSAMPLE
ASSAY
479 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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