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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
29
total RNA-seq
4
WGBS
3
pCHi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA binding
30
Transcription
6
DNA methylation
3
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
52
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
1
recombinant protein
1
transcription factor
Date released
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
3
February, 2021
2
July, 2019
1
December, 2018
February, 2020
1
March, 2020
1
November, 2018
1
October, 2019
Available data
367
bam
bigWig
192
bed narrowPeak
173
tsv
150
fastq
109
bigBed narrowPeak
74
tagAlign
13
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
119
Homo sapiens
Biosample type
94
tissue
21
cell line
3
primary cell
1
in vitro differentiated cells
Organ
315
pancreas
223
kidney
218
epithelium
163
heart
119
liver
111
connective tissue
101
bone element
76
vasculature
75
blood vessel
63
adipose tissue
54
artery
54
eye
28
limb
27
brain
24
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
11
nerve
9
spleen
8
embryo
6
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
119
AMP
Genome assembly (visualization)
6
hg19
3
GRCh38
Lab
83
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bedpe bed3+
bigWig
month_released!
February, 2020
November, 2017
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
RRBS
STARR-seq
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
right lobe of liver
3
1
1
cell line
HepG2
5
9
2
1
2
1
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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