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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
24
ChIP-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
36
DNA accessibility
24
DNA binding
9
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
43
June, 2019
11
August, 2017
10
July, 2019
7
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2019
Available data
69
bigWig
61
bed narrowPeak
58
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
80
Homo sapiens
Biosample type
66
tissue
14
primary cell
Organ
867
pancreas
703
liver
638
connective tissue
510
epithelium
459
adipose tissue
384
heart
354
kidney
228
vasculature
222
blood vessel
168
brain
159
bone element
135
artery
122
limb
79
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
58
hg19
53
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
bedpe bed3+
tagAlign
month_released!
October, 2018
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
Hi-C
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
skeletal muscle tissue
7
1
4
1
1
1
1
gastrocnemius medialis
1
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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