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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
20
ChIP-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
20
DNA binding
9
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
control
Date released
41
June, 2019
10
August, 2017
10
July, 2019
6
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
75
Homo sapiens
Biosample type
63
tissue
12
primary cell
Organ
828
pancreas
624
connective tissue
623
liver
482
epithelium
454
adipose tissue
366
heart
342
kidney
208
vasculature
203
blood vessel
159
bone element
156
brain
128
artery
105
limb
75
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
19
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
58
hg19
53
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bedpe bed3+
tagAlign
month_released!
October, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
75 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
6
1
muscle of arm
17
skeletal muscle tissue
6
1
4
1
1
1
1
gastrocnemius medialis
1
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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