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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
125
Transcription
41
DNA accessibility
6
DNA methylation
Date released
328
November, 2017
306
May, 2021
291
May, 2020
277
August, 2017
261
February, 2021
254
October, 2019
200
August, 2021
200
May, 2022
182
June, 2019
168
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
87
November, 2018
73
September, 2018
71
July, 2019
59
September, 2020
58
November, 2019
53
October, 2018
49
April, 2018
47
September, 2023
46
March, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
20
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
8
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
121
tsv
120
bam
109
bigWig
89
txt
45
fastq
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
tagAlign
Organism
261
Homo sapiens
Biosample type
159
tissue
48
primary cell
28
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
adipose tissue
150
bone element
60
artery
60
blood vessel
heart
60
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
216
AMP
45
HPAP
Genome assembly (visualization)
123
hg19
117
GRCh38
Lab
216
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
files.file_type!
bedpe bed3+
tagAlign
organ_slims!
adipose tissue
heart
BIOSAMPLE
ASSAY
261 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
bone tissue
58
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
+ See 10 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
cell line
EndoC_BH1
26
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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