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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
66
DNA binding
38
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
108
bam
91
bigWig
86
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
116
Homo sapiens
Biosample type
116
tissue
Organ
939
pancreas
786
liver
683
connective tissue
518
epithelium
490
adipose tissue
390
heart
354
kidney
286
brain
233
vasculature
227
blood vessel
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
116
AMP
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
116
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe bed3+
tar
organ_slims!
bone element
thymus
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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