Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
ChIP-seq
4
Hi-C
1
ATAC-seq
1
RRBS
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
17
DNA binding
4
3D chromatin structure
2
DNA methylation
1
Transcription
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
43
June, 2019
August, 2017
7
May, 2019
6
July, 2019
2
May, 2022
1
January, 2018
Available data
57
bam
55
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
tsv
2
bed bedMethyl
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
59
Homo sapiens
Biosample type
47
tissue
12
primary cell
Organ
561
liver
423
pancreas
334
epithelium
330
kidney
260
brain
222
heart
166
vasculature
160
blood vessel
115
limb
101
bone element
83
artery
80
connective tissue
69
blood
69
bodily fluid
59
musculature of body
56
eye
38
nerve
32
adipose tissue
24
spleen
23
embryo
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
pericardium
1
skin of body
1
thymus
Project
59
AMP
Genome assembly (visualization)
50
hg19
47
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
bedpe bed3+
tsv
month_released!
August, 2017
organ_slims!
pericardium
BIOSAMPLE
ASSAY
59 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
RRBS
WGBS
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
skeletal muscle tissue
1
1
1
forelimb muscle
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
1
2
1
See all biosamples
Download