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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
ChIP-seq
14
total RNA-seq
6
DNase-seq
4
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
35
DNA accessibility
22
DNA binding
14
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
42
October, 2019
27
February, 2023
7
June, 2019
1
July, 2019
Available data
46
bed narrowPeak
27
bam
21
bigWig
19
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
tsv
2
hic
1
bed bedMethyl
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
77
Homo sapiens
Biosample type
51
tissue
26
primary cell
Organ
612
liver
522
pancreas
363
epithelium
330
kidney
260
brain
208
heart
199
connective tissue
152
vasculature
146
blood vessel
109
limb
89
adipose tissue
85
musculature of body
69
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
21
vein
19
lung
18
ureter
9
bone element
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
77
AMP
Genome assembly (visualization)
50
hg19
18
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bedpe bed3+
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
FAIRE-seq
Hi-C
RRBS
tissue
islet of Langerhans
1
2
14
4
retina
15
3
pigmented layer of retina
12
primary cell
endothelial cell of umbilical vein
17
2
1
1
retinal pigment epithelial cell
3
1
1
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