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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
total RNA-seq
Assay category
49
DNA binding
8
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
32
histone
32
histone modification
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
51
August, 2017
5
October, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bigWig
423
bam
tsv
25
fastq
13
bed narrowPeak
10
bigBed narrowPeak
7
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
Organism
64
Homo sapiens
Biosample type
65
tissue
Organ
467
liver
365
pancreas
318
kidney
253
epithelium
232
brain
202
heart
170
connective tissue
144
vasculature
139
blood vessel
101
bone element
98
limb
77
musculature of body
74
artery
65
adipose tissue
63
blood
63
bodily fluid
55
eye
27
nerve
19
lung
19
vein
18
ureter
16
embryo
16
skeleton
16
spleen
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
65
AMP
Genome assembly (visualization)
28
hg19
26
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bedpe bed3+
tsv
month_released!
May, 2022
target.investigated_as!
control
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
31
3
white adipose tissue
12
adipose tissue
1
3
3
1
omental fat pad
3
1
2
subcutaneous adipose tissue
2
1
1
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