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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
23
ATAC-seq
23
single cell RNA-seq
22
total RNA-seq
6
DNase-seq
Assay category
77
DNA binding
45
Transcription
29
DNA accessibility
Target of assay
56
transcription factor
18
control
12
RNA binding protein
1
chromatin remodeller
Date released
38
September, 2020
29
December, 2018
24
May, 2022
20
October, 2018
14
November, 2018
10
November, 2017
6
January, 2019
4
December, 2017
3
October, 2017
2
August, 2017
1
July, 2018
Available data
152
fastq
113
bam
88
bed narrowPeak
71
bigWig
67
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
txt
bedpe bed3+
1
tsv
1
zippedFastqFolder
Organism
151
Homo sapiens
Biosample type
66
tissue
46
cell line
39
primary cell
Organ
55
pancreas
35
blood
35
bodily fluid
18
liver
17
epithelium
12
adipose tissue
12
connective tissue
9
spleen
Project
113
AMP
38
HPAP
Genome assembly (visualization)
89
hg19
71
GRCh38
Lab
89
AMP-T2D consortium
38
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
tissue
islet of Langerhans
18
6
body of pancreas
11
1
2
spleen
7
1
1
omental fat pad
6
1
1
right lobe of liver
4
1
1
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cell line
GM12878
35
HepG2
11
primary cell
Langerhans cell
22
pancreatic alpha cell
1
15
pancreatic beta cell
1
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