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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
36
DNase-seq
7
ATAC-seq
6
total RNA-seq
5
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
60
DNA binding
44
DNA accessibility
6
Transcription
5
3D chromatin structure
1
DNA methylation
Target of assay
46
histone
46
histone modification
29
broad histone mark
17
narrow histone mark
14
control
Date released
64
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
Available data
108
bam
85
bigWig
84
bed narrowPeak
77
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
36
bed bed3+
6
tsv
2
hic
1
bed bedMethyl
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
116
Homo sapiens
Biosample type
95
tissue
21
primary cell
Organ
722
pancreas
719
liver
678
connective tissue
490
adipose tissue
364
epithelium
350
heart
286
brain
234
vasculature
228
blood vessel
163
kidney
158
bone element
artery
122
limb
94
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
116
AMP
Genome assembly (visualization)
91
hg19
87
GRCh38
Lab
116
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bedpe bed3+
organ_slims!
artery
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
1
5
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
distal epiphysis of femur
1
+ See 8 more…
primary cell
endothelial cell of umbilical vein
17
2
1
1
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