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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
40
DNase-seq
36
ATAC-seq
22
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
76
DNA accessibility
71
DNA binding
22
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
52
histone
52
histone modification
34
broad histone mark
18
control
18
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
90
October, 2019
39
June, 2019
31
February, 2023
7
May, 2019
6
February, 2021
6
July, 2019
February, 2020
Available data
125
bed narrowPeak
121
bam
97
bigWig
90
bigBed narrowPeak
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
8
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
179
Homo sapiens
Biosample type
174
tissue
5
primary cell
Organ
938
pancreas
788
liver
681
connective tissue
519
epithelium
488
adipose tissue
387
heart
354
kidney
274
brain
231
vasculature
225
blood vessel
159
bone element
139
artery
119
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
179
AMP
Genome assembly (visualization)
130
hg19
102
GRCh38
Lab
179
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe bed3+
month_released!
February, 2020
organ_slims!
esophagus
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
tibial nerve
35
2
1
4
tibial artery
23
2
1
islet of Langerhans
3
1
14
4
muscle of leg
7
13
1
retina
3
15
2
+ See 11 more…
primary cell
retinal pigment epithelial cell
3
1
1
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