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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
25
ChIP-seq
18
total RNA-seq
5
DNase-seq
5
pCHi-C
2
WGBS
1
RRBS
Assay category
34
DNA accessibility
25
DNA binding
18
Transcription
3
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
31
February, 2023
21
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
47
bed narrowPeak
31
bam
24
fastq
22
bigWig
19
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
85
Homo sapiens
Biosample type
80
tissue
5
primary cell
Organ
938
pancreas
788
liver
681
connective tissue
519
epithelium
488
adipose tissue
387
heart
354
kidney
274
brain
231
vasculature
225
blood vessel
159
bone element
139
artery
119
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
48
hg19
22
GRCh38
Lab
85
AMP-T2D consortium
files.file_type!
bedpe bed3+
month_released!
February, 2020
organ_slims!
esophagus
BIOSAMPLE
ASSAY
85 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
WGBS
RRBS
tissue
spleen
1
20
1
1
2
islet of Langerhans
1
2
14
4
retina
15
2
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
1
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