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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
8
snATAC-seq
5
total RNA-seq
3
ATAC-seq
2
DNase-seq
Assay category
77
DNA binding
13
DNA accessibility
5
Transcription
Target of assay
37
transcription factor
24
histone
24
histone modification
16
broad histone mark
14
control
8
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
Date released
43
October, 2019
27
December, 2018
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
Available data
84
bam
71
bigWig
66
bed narrowPeak
65
bigBed narrowPeak
42
fastq
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
95
Homo sapiens
Biosample type
44
tissue
43
cell line
8
primary cell
Organ
939
pancreas
784
liver
683
connective tissue
519
epithelium
490
adipose tissue
390
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
21
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
87
AMP
8
T1D
Genome assembly (visualization)
71
hg19
70
GRCh38
Lab
87
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bedpe bed3+
month_released!
January, 2019
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
tibial nerve
35
5
1
2
islet of Langerhans
1
cell line
GM12878
42
1
primary cell
peripheral blood mononuclear cell
8
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