Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
99
ChIP-seq
84
RNA microarray
56
ATAC-seq
27
DNase-seq
6
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
Assay category
124
Transcription
99
DNA binding
84
DNA accessibility
1
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
216
February, 2021
50
May, 2019
47
October, 2019
43
February, 2023
23
June, 2019
July, 2019
6
August, 2021
3
February, 2020
3
November, 2017
2
March, 2020
1
May, 2021
Available data
255
bam
216
bigWig
153
bed narrowPeak
121
tsv
97
bigBed narrowPeak
88
txt
31
bed broadPeak
31
bigBed broadPeak
27
bed bed3+
6
tagAlign
4
bed bed3
3
fastq
3
hic
bedpe bed3+
1
tar
Organism
394
Homo sapiens
Biosample type
301
tissue
66
cell line
27
primary cell
Organ
933
pancreas
779
liver
665
connective tissue
506
epithelium
478
adipose tissue
365
heart
343
kidney
268
brain
222
vasculature
217
blood vessel
159
bone element
138
artery
117
limb
84
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
393
AMP
1
T1D
Genome assembly (visualization)
263
GRCh38
236
hg19
Lab
393
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
files.file_type!
bedpe bed3+
month_released!
July, 2019
BIOSAMPLE
ASSAY
394 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
Hi-C
tissue
bone element
84
bone tissue
58
coronary artery
1
5
35
2
tibial artery
1
23
1
2
aorta
1
13
4
1
+ See 18 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
1
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
megakaryocyte
1
See all biosamples
Download