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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
4
RRBS
4
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
5
Transcription
4
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
July, 2019
7
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
63
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
2
bed bedMethyl
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
84
Homo sapiens
Biosample type
73
tissue
11
primary cell
Organ
933
pancreas
779
liver
665
connective tissue
506
epithelium
478
adipose tissue
365
heart
343
kidney
268
brain
222
vasculature
217
blood vessel
159
bone element
138
artery
117
limb
84
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
66
hg19
48
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
bedpe bed3+
month_released!
July, 2019
organ_slims!
esophagus
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
DNase-seq
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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