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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
Assay category
34
DNA accessibility
27
DNA binding
8
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
control
Date released
41
June, 2019
23
August, 2017
10
July, 2019
May, 2019
3
March, 2020
2
February, 2020
May, 2022
1
January, 2018
Available data
62
bigWig
54
bed narrowPeak
48
bam
46
bed broadPeak
41
bigBed narrowPeak
33
bed bed3+
33
bigBed broadPeak
13
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
Organism
80
Homo sapiens
Biosample type
68
tissue
12
primary cell
Organ
781
pancreas
648
connective tissue
641
liver
466
adipose tissue
405
epithelium
355
heart
338
kidney
230
brain
173
vasculature
168
blood vessel
159
bone element
129
artery
99
limb
80
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
19
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
64
hg19
48
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bedpe bed3+
month_released!
May, 2019
May, 2022
target.investigated_as!
control
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
pCHi-C
tissue
skeletal muscle tissue
19
1
4
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
1
4
psoas muscle
2
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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