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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
32
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
32
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
control
20
broad histone mark
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
39
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
408
bigWig
406
bam
401
tsv
8
bed narrowPeak
8
fastq
7
tagAlign
5
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
Organism
448
Homo sapiens
Biosample type
447
tissue
2
primary cell
Organ
763
pancreas
608
connective tissue
449
adipose tissue
400
epithelium
353
heart
332
kidney
303
liver
252
brain
203
vasculature
199
blood vessel
159
bone element
127
artery
105
limb
86
musculature of body
59
eye
32
nerve
27
embryo
20
lung
19
vein
18
ureter
16
skeleton
12
blood
12
bodily fluid
11
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
449
AMP
Genome assembly (visualization)
409
hg19
407
GRCh38
Lab
449
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe bed3+
month_released!
May, 2022
target.investigated_as!
control
transcription factor
BIOSAMPLE
ASSAY
449 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
31
3
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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