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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
DNase-seq
4
pCHi-C
2
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
2
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
19
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
58
Homo sapiens
Biosample type
54
tissue
4
primary cell
Organ
856
pancreas
729
liver
644
connective tissue
478
adipose tissue
464
epithelium
350
heart
339
kidney
208
vasculature
203
blood vessel
169
brain
159
bone element
135
artery
107
limb
81
musculature of body
68
blood
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
15
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
58
AMP
Genome assembly (visualization)
33
hg19
5
GRCh38
Lab
58
AMP-T2D consortium
files.file_type!
bedpe bed3+
month_released!
November, 2020
organ_slims!
bodily fluid
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
58 results
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ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
2
1
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