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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
123
DNA binding
111
Transcription
31
DNA accessibility
10
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
33
June, 2019
22
July, 2019
16
May, 2019
7
October, 2019
5
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
160
bigWig
138
bed narrowPeak
135
bam
113
tsv
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
bedpe bed3+
3
hic
Organism
278
Homo sapiens
Biosample type
266
tissue
11
primary cell
1
in vitro differentiated cells
Organ
929
pancreas
789
liver
677
connective tissue
513
epithelium
490
adipose tissue
390
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
278
AMP
Genome assembly (visualization)
159
GRCh38
113
hg19
Lab
238
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
files.file_type!
bedpe bed3+
month_released!
November, 2020
organ_slims!
artery
BIOSAMPLE
ASSAY
278 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
4
2
1
1
left cardiac atrium
40
18
1
heart
14
1
18
4
1
1
heart right ventricle
13
17
1
1
2
1
right cardiac atrium
6
18
1
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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