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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
547
ChIP-seq
188
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
Hi-C
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
547
DNA binding
192
Transcription
28
DNA accessibility
7
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
98
histone modification
97
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
39
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
34
August, 2021
10
July, 2019
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
February, 2020
Available data
674
bam
616
bigWig
465
fastq
435
bed narrowPeak
358
bigBed narrowPeak
173
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
782
Homo sapiens
Biosample type
400
cell line
354
tissue
15
in vitro differentiated cells
13
primary cell
Organ
921
pancreas
782
liver
679
connective tissue
489
adipose tissue
484
epithelium
383
heart
324
kidney
brain
187
vasculature
181
blood vessel
159
bone element
115
artery
94
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
lymph node
Project
782
AMP
Genome assembly (visualization)
616
hg19
524
GRCh38
Lab
712
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bedpe bed3+
month_released!
October, 2019
organ_slims!
brain
BIOSAMPLE
ASSAY
782 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
1
2
1
tissue
liver
140
166
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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