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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
single cell RNA-seq
34
ChIP-seq
16
snATAC-seq
5
total RNA-seq
2
RNA microarray
1
Hi-C
Assay category
55
Transcription
34
DNA binding
16
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
317
August, 2021
311
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
52
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
39
bam
35
bigWig
35
fastq
30
bed narrowPeak
30
bigBed narrowPeak
9
tsv
Organism
108
Homo sapiens
Biosample type
65
tissue
28
cell line
13
primary cell
2
in vitro differentiated cells
Organ
50
kidney
35
blood
35
bodily fluid
8
pancreas
7
spleen
6
epithelium
6
liver
Project
47
KPMP
45
AMP
16
T1D
Genome assembly (visualization)
35
GRCh38
35
hg19
Lab
47
KPMP
45
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
4
audit script error
2
inconsistent ontology term
1
inconsistent control
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
108 results
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Clear Filters
single cell RNA-seq
ChIP-seq
snATAC-seq
total RNA-seq
RNA microarray
Hi-C
tissue
kidney
48
spleen
7
islet of Langerhans
4
pancreas
4
kidney interstitium
1
+ See 1 more…
cell line
GM12878
27
HepG2
1
primary cell
peripheral blood mononuclear cell
8
hepatocyte
5
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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