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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
total RNA-seq
27
ATAC-seq
17
DNase-seq
6
ChIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
44
DNA accessibility
41
Transcription
6
DNA binding
Target of assay
2
RNA binding protein
2
control
2
histone
2
histone modification
2
narrow histone mark
2
transcription factor
Date released
80
May, 2022
69
February, 2023
61
September, 2018
56
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
23
June, 2019
19
December, 2017
19
September, 2020
15
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
November, 2017
6
November, 2020
5
March, 2020
5
May, 2019
5
September, 2017
3
August, 2018
2
October, 2018
1
February, 2020
1
June, 2018
Available data
48
bed narrowPeak
37
fastq
23
bam
21
bigBed narrowPeak
21
bigWig
17
bed bed3+
17
bed broadPeak
17
bigBed broadPeak
4
tsv
Organism
91
Homo sapiens
Biosample type
57
primary cell
34
tissue
1
cell line
Organ
81
kidney
72
epithelium
71
heart
60
pancreas
43
musculature of body
42
vasculature
40
blood vessel
38
eye
37
artery
32
connective tissue
32
limb
31
brain
18
ureter
8
bone element
8
skeleton
2
adipose tissue
2
liver
Project
55
AMP
37
HPAP
Genome assembly (visualization)
42
hg19
21
GRCh38
Lab
55
AMP-T2D consortium
37
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
92 results
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Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
27
pancreatic beta cell
10
epithelial cell of proximal tubule
1
3
retinal pigment epithelial cell
1
3
glomerular visceral epithelial cell
2
+ See 9 more…
tissue
retina
2
15
3
pigmented layer of retina
2
12
cell line
EndoC_BH1
1
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