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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
168
ChIP-seq
8
ATAC-seq
8
snATAC-seq
6
WGBS
4
DNase-seq
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
406
Transcription
168
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
68
transcription factor
57
histone
57
histone modification
41
control
36
broad histone mark
21
narrow histone mark
15
RNA binding protein
10
chromatin remodeller
Date released
386
February, 2021
57
August, 2017
43
October, 2019
27
December, 2018
23
October, 2018
18
January, 2019
16
November, 2018
12
July, 2019
8
January, 2021
3
February, 2020
2
January, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
544
bam
511
bigWig
406
tsv
104
fastq
94
bed narrowPeak
90
bigBed narrowPeak
8
bed bed3+
8
tagAlign
5
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
bedpe bed3+
Organism
601
Homo sapiens
Biosample type
531
tissue
61
cell line
10
primary cell
Organ
939
pancreas
707
liver
683
connective tissue
519
epithelium
490
adipose tissue
390
heart
347
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
594
AMP
8
T1D
Genome assembly (visualization)
512
hg19
509
GRCh38
Lab
594
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bedpe bed3+
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
602 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
1
2
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
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cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
1
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