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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
47
ATAC-seq
39
ChIP-seq
7
DNase-seq
6
single cell RNA-seq
4
WGBS
2
pCHi-C
Assay category
66
Transcription
54
DNA accessibility
39
DNA binding
4
DNA methylation
Target of assay
60
histone
histone modification
40
broad histone mark
26
control
20
narrow histone mark
13
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
66
February, 2021
35
February, 2023
14
May, 2019
9
November, 2018
8
July, 2019
8
October, 2019
7
December, 2018
6
August, 2021
4
June, 2019
3
February, 2020
3
March, 2020
1
January, 2019
1
October, 2017
Available data
119
bam
84
bigWig
68
tsv
67
bed narrowPeak
18
fastq
16
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
bedpe bed3+
1
hic
Organism
165
Homo sapiens
Biosample type
97
tissue
66
cell line
2
primary cell
Organ
788
pancreas
686
liver
605
connective tissue
458
adipose tissue
epithelium
324
kidney
293
heart
163
vasculature
159
bone element
158
blood vessel
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
61
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
6
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
165
AMP
Genome assembly (visualization)
127
GRCh38
89
hg19
Lab
165
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe bed3+
organ_slims!
epithelium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
165 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
tissue
coronary artery
1
36
3
2
spleen
1
14
1
2
1
aorta
1
2
4
2
1
tibial artery
1
1
5
2
thoracic aorta
2
1
5
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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