Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
220
accessible chromatin
167
candidate regulatory elements
157
target gene predictions
83
chromatin state
46
binding sites
41
variant allelic effects
33
histone modifications
19
gene expression
4
eQTL
2
caQTL
2
differential activity
Date released
247
September, 2022
143
February, 2021
129
November, 2021
61
February, 2024
31
June, 2020
20
January, 2021
20
May, 2021
15
May, 2020
15
November, 2022
12
January, 2020
11
August, 2021
11
February, 2023
10
May, 2024
9
February, 2020
7
April, 2020
7
October, 2022
6
August, 2018
6
March, 2020
5
October, 2019
3
August, 2017
2
March, 2023
2
May, 2022
1
January, 2022
1
November, 2019
Available data
665
bed bed3+
tsv
178
bigWig
82
bed bed9
78
txt
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
bigBed bed9
Organism
774
Homo sapiens
Biosample type
557
primary cell
157
tissue
37
cell line
23
in vitro differentiated cells
Organ
633
epithelium
401
connective tissue
399
kidney
393
brain
358
musculature of body
310
lung
286
intestine
223
limb
218
heart
217
bodily fluid
206
blood
205
embryo
202
skin of body
199
pancreas
197
vasculature
172
large intestine
149
blood vessel
146
extraembryonic component
129
liver
117
stomach
107
eye
87
mammary gland
85
bone element
84
small intestine
81
uterus
77
prostate gland
73
placenta
72
adrenal gland
66
adipose tissue
64
penis
64
ureter
62
lymph node
57
artery
49
thymus
48
gonad
43
esophagus
38
spinal cord
33
spleen
25
testis
23
lymphoid tissue
22
ovary
22
thyroid gland
20
vein
19
lymphatic vessel
18
mouth
18
nerve
18
skeleton
16
bronchus
13
bone marrow
12
breast
12
pituitary gland
9
tongue
9
urinary bladder
9
vagina
5
trachea
4
nose
1
pericardium
Project
616
AMP
129
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
748
hg19
268
GRCh38
files.file_type!
bigBed bed9
tsv
BIOSAMPLE
TYPE
774 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
candidate regulatory elements
target gene predictions
chromatin state
binding sites
variant allelic effects
histone modifications
gene expression
eQTL
caQTL
differential activity
primary cell
endothelial cell
15
3
7
2
2
1
1
1
2
hepatocyte
8
2
3
1
1
2
4
4
foreskin keratinocyte
11
4
4
endothelial cell of umbilical vein
2
6
4
3
2
1
trophoblast cell
1
7
5
4
1
+ See 101 more…
tissue
placenta
1
26
15
14
1
2
1
pigmented layer of retina
20
chorionic villus
8
4
4
breast epithelium
1
5
3
2
esophagus squamous epithelium
1
6
2
2
+ See 19 more…
cell line
EndoC_BH1
8
1
1
2
keratinocyte
3
1
HTR-8/Svneo
1
1
1
choroid plexus epithelial cell
1
1
1
colon epithelial cell
1
1
1
+ See 7 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
trophoblast cell
2
2
1
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
mammary gland epithelial cell
1
1
1
+ See 1 more…
See all biosamples
Download