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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
Assay category
66
DNA binding
12
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
82
bam
60
bed narrowPeak
59
bigWig
52
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
bigBed bedMethyl
Organism
89
Homo sapiens
Biosample type
89
tissue
Organ
936
pancreas
786
liver
663
connective tissue
498
epithelium
488
adipose tissue
350
heart
269
kidney
254
brain
227
vasculature
224
blood vessel
159
bone element
139
artery
89
limb
69
blood
69
bodily fluid
53
eye
49
musculature of body
43
nerve
37
embryo
23
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
64
hg19
63
GRCh38
Lab
89
AMP-T2D consortium
files.file_type!
bigBed bedMethyl
files.file_type!!
bigBed bedMethyl
month_released!
June, 2019
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
muscle of leg
7
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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