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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
Assay category
17
DNA binding
9
Transcription
5
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
12
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
9
May, 2019
8
October, 2019
7
July, 2019
4
August, 2021
4
March, 2020
1
February, 2020
1
November, 2017
Available data
78
bam
65
bigWig
55
bed narrowPeak
bigBed narrowPeak
10
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
bigBed bedMethyl
1
tar
Organism
34
Homo sapiens
Biosample type
22
tissue
12
primary cell
Organ
849
pancreas
653
connective tissue
479
adipose tissue
442
epithelium
430
liver
291
heart
246
kidney
159
bone element
157
brain
151
vasculature
150
blood vessel
artery
54
eye
45
musculature of body
37
embryo
37
limb
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
10
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
13
hg19
5
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed bedMethyl
bigBed narrowPeak
organ_slims!
artery
large intestine
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
Hi-C
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
tissue
aorta
2
1
1
4
1
1
thoracic aorta
4
2
1
ascending aorta
3
2
primary cell
endothelial cell of umbilical vein
7
2
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
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