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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
2
Hi-C
2
RRBS
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
3
Transcription
2
3D chromatin structure
2
DNA methylation
1
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
11
August, 2017
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
May, 2019
Available data
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
21
Homo sapiens
Biosample type
19
tissue
2
primary cell
Organ
321
pancreas
219
kidney
217
epithelium
166
liver
165
heart
113
connective tissue
101
bone element
79
blood vessel
79
vasculature
66
adipose tissue
62
brain
56
artery
54
eye
27
limb
21
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
3
hg19
Lab
21
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigBed bedMethyl
bigWig
month_released!
July, 2019
organ_slims!
nerve
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
2
1
1
psoas muscle
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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