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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
30
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
ATAC-seq
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
118
DNA binding
31
Transcription
4
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Target of assay
95
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
RNA binding protein
1
recombinant protein
Date released
45
November, 2017
35
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
3
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
July, 2019
1
November, 2018
1
October, 2019
Available data
624
bam
bigWig
408
fastq
385
bed narrowPeak
303
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
165
Homo sapiens
Biosample type
95
tissue
67
cell line
2
primary cell
1
in vitro differentiated cells
Organ
321
pancreas
218
kidney
217
epithelium
167
heart
165
liver
113
connective tissue
101
bone element
80
blood vessel
80
vasculature
66
adipose tissue
62
brain
56
artery
54
eye
31
limb
25
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
165
AMP
Genome assembly (visualization)
6
hg19
3
GRCh38
Lab
128
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigBed bedMethyl
bigWig
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
165 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
ATAC-seq
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
50
9
2
2
1
2
1
primary cell
Liver fetal (hepatocyte)
1
hepatocyte
1
in vitro differentiated cells
hepatocyte
1
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