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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
510
DNA binding
193
Transcription
29
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
194
May, 2020
53
December, 2017
52
November, 2018
40
May, 2022
34
August, 2017
33
August, 2021
8
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
652
bam
592
bigWig
440
fastq
412
bed narrowPeak
337
bigBed narrowPeak
174
tsv
68
tagAlign
55
bed broadPeak
55
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
hdf5
1
vcf
Organism
745
Homo sapiens
Biosample type
391
cell line
335
tissue
11
primary cell
8
in vitro differentiated cells
Organ
861
pancreas
745
liver
636
connective tissue
472
epithelium
469
adipose tissue
322
kidney
298
heart
211
brain
187
vasculature
182
blood vessel
159
bone element
127
artery
87
limb
72
musculature of body
69
blood
69
bodily fluid
60
eye
33
embryo
27
nerve
20
lung
19
spleen
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
745
AMP
Genome assembly (visualization)
592
hg19
502
GRCh38
Lab
675
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed bedMethyl
hdf5
month_released!
April, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
745 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
14
1
2
2
2
1
tissue
liver
123
167
20
2
3
1
1
1
1
right lobe of liver
7
3
1
2
1
2
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
8
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