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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
127
DNA binding
37
DNA accessibility
24
Transcription
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
16
control
Date released
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
13
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
165
bam
156
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
26
tsv
12
fastq
hdf5
2
bed bedMethyl
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
190
Homo sapiens
Biosample type
182
tissue
8
primary cell
Organ
939
pancreas
680
connective tissue
510
epithelium
489
adipose tissue
472
liver
385
heart
350
kidney
226
vasculature
224
blood vessel
190
brain
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
190
AMP
Genome assembly (visualization)
154
GRCh38
144
hg19
Lab
190
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bigBed bedMethyl
hdf5
month_released!
November, 2017
organ_slims!
stomach
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
+ See 75 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 2 more…
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