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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
Assay category
27
DNA binding
Target of assay
637
histone modification
636
histone
401
transcription factor
322
broad histone mark
314
narrow histone mark
237
control
83
RNA binding protein
73
recombinant protein
27
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
15
November, 2017
November, 2018
6
January, 2019
3
December, 2017
2
December, 2018
1
August, 2017
Available data
27
bam
27
bed narrowPeak
27
bigBed narrowPeak
27
bigWig
27
fastq
5
bed broadPeak
5
bigBed broadPeak
Organism
27
Homo sapiens
Biosample type
23
cell line
2
tissue
1
in vitro differentiated cells
1
primary cell
Organ
18
liver
8
blood
8
bodily fluid
connective tissue
1
epithelium
Project
27
AMP
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bigBed bedMethyl
tagAlign
month_released!
November, 2018
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
cell line
HepG2
15
GM12878
8
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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