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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
189
total RNA-seq
24
ATAC-seq
8
snATAC-seq
6
DNase-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
526
DNA binding
193
Transcription
38
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
389
transcription factor
86
control
82
recombinant protein
68
RNA binding protein
46
histone modification
45
histone
33
chromatin remodeller
24
broad histone mark
21
narrow histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
144
May, 2020
67
November, 2018
63
December, 2017
40
May, 2022
33
August, 2017
31
August, 2021
28
December, 2018
23
January, 2019
9
July, 2019
8
January, 2021
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
January, 2018
Available data
741
bam
677
bigWig
525
fastq
495
bed narrowPeak
412
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
771
Homo sapiens
Biosample type
449
cell line
290
tissue
17
primary cell
15
in vitro differentiated cells
Organ
921
pancreas
702
liver
659
connective tissue
511
epithelium
481
adipose tissue
379
heart
350
kidney
228
vasculature
223
blood vessel
166
brain
159
bone element
135
artery
121
limb
77
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
763
AMP
8
T1D
Genome assembly (visualization)
636
hg19
553
GRCh38
Lab
692
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed bedMethyl
tagAlign
organ_slims!
thymus
BIOSAMPLE
ASSAY
771 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
366
14
1
2
2
2
1
GM12878
60
1
tissue
liver
75
167
20
2
1
3
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
peripheral blood mononuclear cell
8
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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