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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
40
ATAC-seq
5
ChIP-seq
5
pCHi-C
4
DNase-seq
Assay category
81
Transcription
44
DNA accessibility
5
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
150
February, 2021
39
February, 2023
21
October, 2019
7
June, 2019
1
February, 2020
1
May, 2021
Available data
88
txt
73
bam
64
bigWig
63
tsv
41
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
bigBed bedMethyl
Organism
219
Homo sapiens
Biosample type
214
tissue
5
primary cell
Organ
921
pancreas
702
liver
659
connective tissue
511
epithelium
481
adipose tissue
379
heart
350
kidney
228
vasculature
223
blood vessel
166
brain
159
bone element
135
artery
121
limb
77
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
218
AMP
1
T1D
Genome assembly (visualization)
103
hg19
72
GRCh38
Lab
218
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
files.file_type!
bigBed bedMethyl
tagAlign
BIOSAMPLE
ASSAY
219 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
DNase-seq
tissue
bone element
84
bone tissue
58
islet of Langerhans
14
1
2
4
retina
3
15
3
pigmented layer of retina
2
12
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primary cell
retinal pigment epithelial cell
3
1
megakaryocyte
1
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