Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
120
total RNA-seq
48
single cell RNA-seq
5
ATAC-seq
Assay category
412
DNA binding
168
Transcription
5
DNA accessibility
Target of assay
244
transcription factor
88
histone
88
histone modification
77
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
314
October, 2019
255
August, 2021
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
85
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
567
bam
503
bigWig
385
fastq
318
bed narrowPeak
317
bigBed narrowPeak
164
tsv
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
2
bed bed3+
Organism
585
Homo sapiens
Biosample type
315
cell line
208
tissue
62
primary cell
Organ
315
liver
168
pancreas
91
brain
44
epithelium
6
vasculature
3
blood vessel
2
connective tissue
Project
585
AMP
Genome assembly (visualization)
452
hg19
451
GRCh38
Lab
585
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bigBed bedMethyl
xls
BIOSAMPLE
ASSAY
585 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
cell line
HepG2
315
tissue
islet of Langerhans
6
120
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
pancreatic beta cell
9
2
pancreatic alpha cell
7
2
pancreatic acinar cell
5
1
pancreatic delta cell
4
astrocyte of the cerebellum
3
+ See 13 more…
See all biosamples
Download