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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
pCHi-C
Assay category
32
DNA accessibility
19
Transcription
4
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
6
June, 2019
1
February, 2020
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
bigBed bedMethyl
Organism
59
Homo sapiens
Biosample type
56
tissue
3
primary cell
Organ
843
pancreas
730
liver
670
connective tissue
483
adipose tissue
429
epithelium
374
heart
347
kidney
281
brain
229
vasculature
225
blood vessel
159
bone element
140
artery
121
limb
92
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
23
spleen
22
vein
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
32
hg19
5
GRCh38
Lab
59
AMP-T2D consortium
files.file_type!
bigBed bedMethyl
zippedFastqFolder
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
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