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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
485
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
DNase-seq
4
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
485
DNA binding
188
Transcription
27
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
305
transcription factor
94
control
83
histone modification
82
histone
82
recombinant protein
54
RNA binding protein
51
narrow histone mark
31
broad histone mark
20
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
53
August, 2017
52
November, 2018
December, 2017
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
607
bam
562
bigWig
402
fastq
386
bed narrowPeak
307
bigBed narrowPeak
169
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
713
Homo sapiens
Biosample type
400
cell line
312
tissue
1
primary cell
Organ
932
pancreas
725
liver
680
connective tissue
epithelium
488
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
24
embryo
23
spleen
22
vein
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
713
AMP
Genome assembly (visualization)
562
hg19
470
GRCh38
Lab
642
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed bedMethyl
month_released!
December, 2017
organ_slims!
epithelium
BIOSAMPLE
ASSAY
713 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
tissue
liver
107
167
20
2
3
1
1
1
1
right lobe of liver
3
1
2
1
2
primary cell
hepatic stellate cell
1
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