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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
36
DNase-seq
8
snATAC-seq
4
Hi-C
4
total RNA-seq
3
ATAC-seq
Assay category
126
DNA binding
47
DNA accessibility
4
3D chromatin structure
4
Transcription
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
69
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
February, 2021
4
July, 2019
February, 2020
1
January, 2018
Available data
168
bam
146
bigWig
140
bed narrowPeak
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
tsv
1
bed bedMethyl
bigBed bedMethyl
Organism
181
Homo sapiens
Biosample type
112
tissue
61
cell line
8
primary cell
Organ
907
pancreas
784
liver
486
epithelium
342
kidney
316
heart
272
brain
224
connective tissue
165
vasculature
160
blood vessel
112
limb
101
adipose tissue
90
musculature of body
73
artery
69
blood
69
bodily fluid
59
eye
42
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
173
AMP
8
T1D
Genome assembly (visualization)
145
hg19
143
GRCh38
Lab
173
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
files.file_type!
bigBed bedMethyl
month_released!
February, 2020
February, 2021
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
total RNA-seq
ATAC-seq
tissue
tibial nerve
35
2
4
1
tibial artery
23
2
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
+ See 3 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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