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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
8
snATAC-seq
2
pCHi-C
1
ATAC-seq
1
DNase-seq
Assay category
80
DNA binding
10
DNA accessibility
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
22
November, 2018
8
January, 2021
January, 2018
1
March, 2020
1
May, 2021
1
October, 2017
Available data
84
bam
84
fastq
70
bigWig
68
bed narrowPeak
67
bigBed narrowPeak
2
bed bedMethyl
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
92
Homo sapiens
Biosample type
60
cell line
23
tissue
9
primary cell
Organ
940
pancreas
788
liver
680
connective tissue
518
epithelium
488
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
91
musculature of body
68
blood
68
bodily fluid
60
eye
43
nerve
36
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
83
AMP
9
T1D
Genome assembly (visualization)
68
GRCh38
68
hg19
Lab
83
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bigBed bedMethyl
month_released!
January, 2018
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
DNase-seq
cell line
GM12878
60
tissue
spleen
20
1
1
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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