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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
DNase-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
24
Transcription
7
DNA accessibility
2
3D chromatin structure
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
30
control
2
RNA binding protein
2
transcription factor
Date released
88
November, 2017
86
October, 2019
June, 2019
28
May, 2019
16
October, 2017
15
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
210
bam
188
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
26
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
4
bed bed3+
2
bed bedMethyl
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
250
Homo sapiens
Biosample type
239
tissue
11
primary cell
Organ
936
pancreas
786
liver
663
connective tissue
498
epithelium
488
adipose tissue
350
heart
269
kidney
254
brain
227
vasculature
blood vessel
159
bone element
139
artery
89
limb
69
blood
69
bodily fluid
53
eye
49
musculature of body
43
nerve
37
embryo
23
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
250
AMP
Genome assembly (visualization)
185
GRCh38
138
hg19
Lab
250
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bigBed bedMethyl
month_released!
June, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
2
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
See all biosamples
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