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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
6
ATAC-seq
6
Hi-C
4
WGBS
3
single cell RNA-seq
2
FAIRE-seq
Assay category
60
Transcription
8
DNA accessibility
6
3D chromatin structure
4
DNA methylation
Target of assay
3
control
Date released
683
February, 2021
350
November, 2017
341
May, 2020
305
August, 2021
297
May, 2021
273
August, 2017
236
October, 2019
190
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
81
November, 2018
78
July, 2019
67
December, 2017
59
May, 2019
57
March, 2020
55
October, 2018
47
September, 2023
45
November, 2019
43
April, 2019
40
September, 2020
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
16
April, 2018
16
January, 2021
15
May, 2023
13
October, 2017
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
5
September, 2018
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
78
bigWig
77
bam
60
tsv
17
bed bedMethyl
bigBed bedMethyl
7
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
78
Homo sapiens
Biosample type
63
tissue
15
primary cell
Organ
17
connective tissue
17
heart
16
brain
12
adipose tissue
10
blood vessel
10
vasculature
9
liver
8
musculature of body
epithelium
7
kidney
4
limb
4
pancreas
3
artery
1
pericardium
Project
78
AMP
Genome assembly (visualization)
69
hg19
66
GRCh38
Lab
78
AMP-T2D consortium
files.file_type!
bigBed bedMethyl
organ_slims!
epithelium
lung
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
78 results
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total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
WGBS
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
2
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 19 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 7 more…
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