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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
9
DNase-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
55
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
52
transcription factor
19
RNA binding protein
16
recombinant protein
5
chromatin remodeller
3
control
3
other context
3
other post-translational modification
Date released
683
February, 2021
400
November, 2017
376
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
80
April, 2019
78
July, 2019
75
December, 2017
74
October, 2018
66
November, 2018
57
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
15
May, 2023
12
January, 2019
12
September, 2018
10
November, 2020
8
December, 2018
8
January, 2021
7
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
73
fastq
72
bam
68
bigWig
61
bed narrowPeak
61
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
bigBed bedMethyl
1
csv
Organism
66
Homo sapiens
Biosample type
45
cell line
20
tissue
1
primary cell
Organ
52
liver
blood
15
bodily fluid
7
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
66
AMP
Genome assembly (visualization)
60
GRCh38
59
hg19
Lab
66
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bigBed bedMethyl
organ_slims!
adrenal gland
blood
epithelium
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
DNase-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
tissue
spleen
6
1
liver
4
2
body of pancreas
2
brain
2
omental fat pad
1
+ See 2 more…
primary cell
pancreatic cell
1
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