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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
60
total RNA-seq
47
ATAC-seq
7
DNase-seq
6
single cell RNA-seq
3
pCHi-C
1
Hi-C
1
WGBS
Assay category
99
DNA binding
66
Transcription
54
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
60
histone
60
histone modification
40
broad histone mark
26
control
20
narrow histone mark
13
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
7
December, 2018
7
January, 2019
7
July, 2019
7
November, 2018
6
August, 2021
4
June, 2019
4
March, 2020
3
February, 2020
1
May, 2021
1
October, 2017
Available data
179
bam
144
bigWig
127
bed narrowPeak
76
bigBed narrowPeak
68
tsv
24
fastq
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
3
bed bedMethyl
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
224
Homo sapiens
Biosample type
155
tissue
66
cell line
3
primary cell
Organ
940
pancreas
788
liver
681
connective tissue
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
223
AMP
1
T1D
Genome assembly (visualization)
184
GRCh38
150
hg19
Lab
223
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed bedMethyl
organ_slims!
epithelium
BIOSAMPLE
ASSAY
224 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
Hi-C
WGBS
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
spleen
20
1
1
1
aorta
13
1
4
1
1
1
ascending aorta
16
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
megakaryocyte
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
See all biosamples
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