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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 574ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 22DNase-seq
  • 21pCHi-C
  • 10Hi-C
  • 7WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 574DNA binding
  • 120DNA accessibility
  • 57Transcription
  • 103D chromatin structure
  • 7DNA methylation
Target of assay
  • 387transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • 60control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 74October, 2019
  • 61November, 2018
  • 59December, 2017
  • 56May, 2020
  • 32February, 2021
  • 32June, 2019
  • 28December, 2018
  • 23November, 2019
  • 21January, 2019
  • 19August, 2017
  • 18August, 2021
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 9July, 2019
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 802Homo sapiens
Biosample type
  • 462cell line
  • 164primary cell
  • 102tissue
  • 71in vitro differentiated cells
  • 3stem cell
Organ
  • 407liver
  • 82epithelium
  • 61pancreas
  • 56blood
  • 56bodily fluid
  • 41vasculature
  • 37blood vessel
  • 35kidney
  • 23brain
  • 18vein
  • 14heart
  • 11embryo
  • 10connective tissue
  • 10musculature of body
  • 7artery
  • 5limb
  • 3eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1thymus
Project
  • 773AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 645hg19
  • 576GRCh38
Lab
  • 758AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 81inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • bigBed bedMethyl
BIOSAMPLE
ASSAY

802 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
cell line
HepG233515212
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
endothelial cell of umbilical vein1611
skeletal muscle myoblast1512
macrophage11
tissue
liver361
islet of Langerhans191
body of pancreas7
thoracic aorta7
brain51
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC3
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