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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
8
ChIP-seq
4
pCHi-C
2
Hi-C
1
RRBS
Assay category
28
DNA accessibility
19
Transcription
8
DNA binding
2
3D chromatin structure
1
DNA methylation
Target of assay
5
histone
5
histone modification
3
control
3
narrow histone mark
2
broad histone mark
Date released
31
February, 2023
27
October, 2019
1
February, 2020
1
July, 2019
1
June, 2019
1
March, 2020
Available data
46
bed narrowPeak
27
bam
21
bigWig
bigBed narrowPeak
8
bed broadPeak
bigBed broadPeak
6
bed bed3+
5
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
62
Homo sapiens
Biosample type
53
tissue
9
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
446
epithelium
426
liver
299
heart
245
kidney
159
bone element
159
brain
151
vasculature
149
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
30
hg19
Lab
62
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed broadPeak
bigBed narrowPeak
csv
BIOSAMPLE
ASSAY
62 results
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ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
Hi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
primary cell
endothelial cell of umbilical vein
5
2
retinal pigment epithelial cell
1
1
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